miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex



ABOUT THIS RECORD

ID: MNEST035014
species: Daphnia pulex
miRNA family: mir-153
source: miRBase, original name: dpu-mir-153 (MI0012223)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGCATAGTCACAAAAGTGATG

miRNA*
TCATTTTTGTGATTTTTGCAATT

mismatches: 2
bulges: 1

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pre-miRNA
ATATCATCTGTGGCTCACCTCTCATTTTTGTGATTTTTGCAATTTAAATTAAACAATTAATTGCATAGTCACAAAAGTGATGGGTGCTTTGCAGAATTTG
T


dot-bracket secondary structure
......((((..(..(((((.((((((((((((((..(((((((..............))))))).)))))))))))))).)))))..)..)))).....
.



SIMILARITIES
miRBase bma-mir-153: 0.00000008

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-153: 0.000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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